Modified watershed approach for segmentation of complex optical coherence tomographic images

Watershed segmentation method has been used in various applications. But many a times, due to its over-segmentation attributes, it underperforms in several tasks where noise is a dominant source. In this study, Optical Coherence Tomography images have been acquired, and segmentation has been performed to analyse the different regions of fluid filled sacs in a lemon. A modified watershed algorithm has been proposed which gives promising results for segmentation of internal lemon structures

Opto-UNet: Optimized UNet for Segmentation of Varicose Veins in Optical Coherence Tomography

Human veins are important for carrying the blood from the body-parts to the heart. The improper functioning of the human veins may arise from several venous diseases. Varicose vein is one such disease wherein back flow of blood can occur, often resulting in increased venous pressure or restricted blood flow due to changes in the structure of vein. To examine the functional characteristics of the varicose vein, it is crucial to study the physical and bio mechanical properties of the vein. This work proposes a segmentation model Opto-UNet, for segmenting the venous wall structure. Optical Coherence Tomography system is used to acquire images of varicose vein. As the extracted vein is not uniform in shape, hence adequate method of segmentation is required to segment the venous wall. Opto-UNet model is based on the U-Net architecture wherein a new block is integrated into the architecture, employing atrous and separable convolution to extract spatially wide-range and separable features maps for attaining advanced performance. Furthermore, the depth wise separable convolution significantly reduces the complexity of the network by optimizing the number of parameters. The model achieves accuracy of 0.9830, sensitivity of 0.8425 and specificity of 0.9980 using 8.54 million number of parameters. These results indicate that model is highly adequate in segmenting the varicose vein wall without deteriorating the segmentation quality along with reduced complexity.acceptedVersionPeer reviewe

Fiber-based polarization-sensitive Fourier domain optical coherence tomography using B-scan-oriented polarization modulation method

Fiber-based high-speed polarization-sensitive Fourier domain optical coherence tomography (PS-FD-OCT) is developed at 840 nm wavelength using polarization modulation method. The incident state of polarization is modulated along B-scan. The spectrometer has a polarizing beamsplitter and two line-CCD cameras operated at a line rate of 27.7 kHz. From the 0th and 1st orders of the spatial frequencies along the B-scanning, a depth-resolved Jones matrix can be derived. Since continuous polarization modulation along B-scan causes fringe washout, equivalent discrete polarization modulation is applied to biological measurements. For the demonstration, an in vitro chicken breast muscle, an in vivo finger pad, and an in vivo caries lesion of a human tooth are measured. Three dimensional phase retardation images show the potentials for applying the system to biological and medical studies.This paper was published in Optics Express and is made available as an electronic reprint with the permission of OSA. The paper can be found at the following URL on the OSA website: http://www.opticsinfobase.org/oe/abstract.cfm?URI=oe-14-14-6502. Systematic or multiple reproduction or distribution to multiple locations via electronic or other means is prohibited and is subject to penalties under law

Automatic characterization and segmentation of human skin using three-dimensional optical coherence tomography

A set of fully automated algorithms that is specialized for analyzing a three-dimensional optical coherence tomography (OCT) volume of human skin is reported. The algorithm set first determines the skin surface of the OCT volume, and a depth-oriented algorithm provides the mean epidermal thickness, distribution map of the epidermis, and a segmented volume of the epidermis. Subsequently, an en face shadowgram is produced by an algorithm to visualize the infundibula in the skin with high contrast. The population and occupation ratio of the infundibula are provided by a histogram-based thresholding algorithm and a distance mapping algorithm. En face OCT slices at constant depths from the sample surface are extracted, and the histogram-based thresholding algorithm is again applied to these slices, yielding a three-dimensional segmented volume of the infundibula. The dermal attenuation coefficient is also calculated from the OCT volume in order to evaluate the skin texture. The algorithm set examines swept-source OCT volumes of the skins of several volunteers, and the results show the high stability, portability and reproducibility of the algorithm.This paper was published in Optics Express and is made available as an electronic reprint with the permission of OSA. The paper can be found at the following URL on the OSA website: http://www.opticsinfobase.org/abstract.cfm?URI=oe-14-5-1862. Systematic or multiple reproduction or distribution to multiple locations via electronic or other means is prohibited and is subject to penalties under law

Effect of Substrate Temperature on the Microstructural, Morphological, and Optical Properties of Electrosprayed ZnO Thin Films

Polycrystalline ZnO thin films were prepared on silicon substrates using electrospray method with vertical setup. Water and ethanol were used as solvents for zinc acetate dehydrate and no postdeposition annealing was required for formation of ZnO. The influence of substrate temperature in the range of 150–250°C on surface morphology and roughness was studied by Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM), and optical profilometry. An improvement of surface quality and smoothing of the films with temperature were obtained. X-ray diffraction measurements revealed that, at all investigated substrate temperatures, the films were polycrystalline with crystallites’ sizes decreasing with temperature. Besides, the preferred crystal orientation varies with the substrate temperature. The analysis of surface chemical composition and oxidation state was performed with X-ray photoelectron spectroscopy (XPS). It was shown that, at substrate temperature of 200°C, the deposited ZnO films were closest to the stoichiometric ones. In general, the films at 150°C were oxygen-deficient, while at other studied temperatures, the films had excess of oxygen more pronouncedly at 200°C. Spectral ellipsometric measurements confirmed that the structural disorder is the highest at 150°C and improves with temperature. Refractive indexes for films at 200°C and 250°C are almost the same, 1.97 and 1.93, respectively, at wavelength of 600 nm, while for the sample deposited at 150°C, the refractive index is substantially lower, 1.67. The optical band gap is slightly influenced by the substrate temperature: 3.27 eV at 150°C and 3.32 eV at 200°C

In-Situ Ellipsometric Study of the Optical Properties of LTL-Doped Thin Film Sensors for Copper(II) Ion Detection

International audienc

NOVEL METHODS FOR THE ASSESSMENT OF CRACK PROPAGATION IN ENDODONTICALLY TREATED TEETH

Background: Vertical root fractures (VRF) can be defined as either complete or incomplete fractures that occur predominantly in endodontically treated teeth (ETT). The clinical symptoms and conventional radiographic techniques are not always accurate, which can lead to diagnostic errors. This motivated us to seek new, better techniques that can improve the prognosis and treatment of ETT with vertical fractures. Objective: The aim of this study was to investigate the potential of three novel techniques: Cone Beam Computed Tomography (CBCT), Optical Computed Tomography (OCT) and 3D Profilometry for the visualization and assessment of VRF. Methods: The study involved intact human premolars, extracted for orthodontic or periodontal reasons. The teeth were then endodontically treated and restored with prefabricated metal posts. No additional preparation of the coronal hard dental tissues was performed, apart from the access cavity. After thermocycling, their fracture resistance was evaluated in a standard testing machine. The resulted vertical fractures and crack propagation were evaluated using CBCT, OCT and 3D Profilometry. Results: The CBCT provided visualization of the tooth in three planes: axial, coronal and sagittal. Root fractures were observed at the coronal and middle 1/3 of the root. The OCT provided highly-detailed, biomicroscopic cross-sectional images of the mesial and distal root surfaces. The images, obtained with 3D Profilometry showed the surface topography and provided precise information about the width and depth of the VRF. Conclusion: All of the techniques used in this study proved to be highly informative, non-invasive and non-contact methods, suitable for the evaluation of VRF